Photo Review Workbench Photos, review, candidate records, Excel export

Colony Dashboard

Operational view of review pressure, source-backed mouse state, and export readiness.

Export or view

Genotype Distribution

Derived view
ApoM Tg/TgPV-CreAi14GeneX-floxOther

Axes are display categories from configured masters or current accepted rows, not hard-coded canonical truth.

Age Distribution

Computed view

Uses accepted DOB ranges only; uncertain DOB values remain in review.

Sex Ratio

Snapshot

Weaning Due

Reviewable rule
DueLitterCountStatus

Active Matings

Event view
MatingParentsSourceStatus

Alerts

Mouse Detail

Unified mouse record with source evidence, events, cage snapshot, and review status kept visible.

Canonical state + evidence

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Basic Information

Canonical structured state

Genotype

Reviewable result

Pedigree

Timeline

Events

Cage / Location

Snapshot

Experiment Usage

Assigned view

Notes

Note-line evidence

PV-Cre

Strain-level visualization keeps relationship views separate from configured strain masters.

View + configured master

Genetic Relationship Network

Relationship view
Gene
PvalbMGI: 1930771
Allele
Pvalb-IRES-CreMGI: 5656652
Strain
PV-CreConfigured master
Cross
Ai14Reporter line
Exp
EXP-2026-041Assigned mice
Current relationship graph Cross or experiment edge Requires source/config confirmation

Strain Profile

Explainable score
Breeding Geno Experiment Availability Risk Cost

Scores are derived review aids. Keep criteria editable before using them for colony decisions.

Genotype Distribution

Related Experiments

Export or view

Quick Reference

Configured info
Cre expressionParvalbumin promoter
BackgroundC57BL/6J
Recommended reportersAi14, Ai9, DIO series
StorageRI Animal Facility - Room B2

Photo Review Workbench

Start with raw cage-card photos, keep parsed values separate, and route uncertain mouse IDs, strain, DOB, mating, litter, and genotype evidence into review before candidate records or Excel export.

Raw source + parsed result
Photo-to-export path Load fixture parse results, inspect cage-card evidence, apply a reviewed correction, then check export blockers.
Latest batch No uploaded batch in this session.
Batch intake
Photo Uploaded Batch Card Type Raw Strain Matched Strain DOB Mouse / Count Confidence Status Issue

Review Queue

Resolve low-confidence, conflicting, or biologically unlikely parsed values with source evidence in view.

Review item
0 pending review items 0 exports blocked
Severity Issue Type Source Current Value Suggested Value Status

Candidate Records

Canonical candidate state stays traceable to source photos, parsed note lines, and accepted actions.

Canonical structured state
Mouse ID Strain Sex DOB Genotype Status Source

Export Center

Export readiness updates after accepted uploads and reviews. Excel workbooks are generated on demand from structured records, never the only source of truth.

Export or view
Separation workbook0 rows
Animalsheet0 rows
Blocked exports0
Separation filename No accepted separation rows yet.
XLSX
Animal sheet filename No accepted mating rows yet.
XLSX
Separation workbook preview Accepted rows only; review/conflict items stay blocked.
Export View Source Layer Included Rows Blocked Rows Traceability
Attempt View Included Blocked Result
Source Status Issue Current Value Reason

Settings

Configurable masters prevent strain names, genotype categories, protocols, and date rules from being hard-coded.

Canonical configuration state
No distribution workbook imported in this session.
Master Example Entry Purpose
Strain MasterConfigured strainAllowed target for raw strain matching.
My Assigned StrainsActive scopeDefault matching scope for cage card OCR and export grouping.
OCR AliasRaw handwritten textMaps repeated OCR variants to a configured strain.
Genotype CategoriesConfigured categoryBlocks unexpected genotype values until review.
Management RulesMin/max age daysCreates warnings without hard-coded date rules.
Distribution ImportOccasional assignment workbookHelps update My Assigned Strains when assignments change; never updates cage state directly.
Parse Assist PolicyLLM-optionalCore parsing runs locally/manual-first; external OCR or LLM payloads stay blocked until approved.
Assigned Strain Aliases Source Status Action Boundary
Source Group Responsible Mating Type Cage Count Mating Cages Boundary
Candidate Mating Type Rows People Cage Scope Review Signal Action Boundary